| Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature methods 19 (2), 171-178, 2022 | 646 | 2022 |
| CellRank for directed single-cell fate mapping M Lange, V Bergen, M Klein, M Setty, B Reuter, M Bakhti, H Lickert, ... Nature methods 19 (2), 159-170, 2022 | 541 | 2022 |
| Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ... Molecular systems biology 17 (3), e9923, 2021 | 279 | 2021 |
| Scalable pre-training of large autoregressive image models A El-Nouby, M Klein, S Zhai, MA Bautista, A Toshev, V Shankar, ... arXiv preprint arXiv:2401.08541, 2024 | 61 | 2024 |
| Mapping cells through time and space with moscot D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander, ... Nature, 1-11, 2025 | 53 | 2025 |
| CellRank 2: unified fate mapping in multiview single-cell data P Weiler, M Lange, M Klein, D Pe’er, F Theis Nature Methods 21 (7), 1196-1205, 2024 | 47* | 2024 |
| Discovering ordinary differential equations that govern time-series S Becker, M Klein, A Neitz, G Parascandolo, N Kilbertus arXiv preprint arXiv:2211.02830, 2022 | 19* | 2022 |
| Monge, bregman and occam: Interpretable optimal transport in high-dimensions with feature-sparse maps M Cuturi, M Klein, P Ablin arXiv preprint arXiv:2302.04065, 2023 | 18 | 2023 |
| Defining and benchmarking open problems in single-cell analysis MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ... Research Square, rs. 3. rs-4181617, 2024 | 11 | 2024 |
| Learning elastic costs to shape monge displacements M Klein, AA Pooladian, P Ablin, E Ndiaye, J Niles-Weed, M Cuturi Advances in Neural Information Processing Systems 37, 108542-108565, 2024 | 9* | 2024 |
| Mapping lineage-traced cells across time points with moslin M Lange, Z Piran, M Klein, B Spanjaard, D Klein, JP Junker, FJ Theis, ... Genome Biology 25 (1), 277, 2024 | 9 | 2024 |
| Multimodal autoregressive pre-training of large vision encoders E Fini, M Shukor, X Li, P Dufter, M Klein, D Haldimann, S Aitharaju, ... arXiv preprint arXiv:2411.14402, 2024 | 8 | 2024 |
| Progressive entropic optimal transport solvers P Kassraie, AA Pooladian, M Klein, J Thornton, J Niles-Weed, M Cuturi Advances in Neural Information Processing Systems 37, 19561-19590, 2024 | 4 | 2024 |
| Simple reflow: Improved techniques for fast flow models B Kim, YG Hsieh, M Klein, M Cuturi, JC Ye, B Kawar, J Thornton arXiv preprint arXiv:2410.07815, 2024 | 4 | 2024 |
| Contrasting multiple representations with the multi-marginal matching gap Z Piran, M Klein, J Thornton, M Cuturi arXiv preprint arXiv:2405.19532, 2024 | 4 | 2024 |
| Unbalanced low-rank optimal transport solvers M Scetbon, M Klein, G Palla, M Cuturi Advances in Neural Information Processing Systems 36, 52312-52325, 2023 | 4 | 2023 |
| Controlling Language and Diffusion Models by Transporting Activations P Rodriguez, A Blaas, M Klein, L Zappella, N Apostoloff, M Cuturi, X Suau arXiv preprint arXiv:2410.23054, 2024 | 3 | 2024 |
| End-to-end Learning of Sparse Interventions on Activations to Steer Generation P Rodriguez, M Klein, E Gualdoni, A Blaas, L Zappella, M Cuturi, X Suau arXiv preprint arXiv:2503.10679, 2025 | | 2025 |
| Multivariate Conformal Prediction using Optimal Transport M Klein, L Bethune, E Ndiaye, M Cuturi arXiv preprint arXiv:2502.03609, 2025 | | 2025 |
| Careful with that scalpel: improving gradient surgery with an EMA YG Hsieh, J Thornton, E Ndiaye, M Klein, M Cuturi, P Ablin arXiv preprint arXiv:2402.02998, 2024 | | 2024 |
Fabian J TheisHelmholtz Munich, Technical University of MunichBestätigte E-Mail-Adresse bei helmholtz-muenchen.de
