| Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network M Galhardo, L Sinkkonen, P Berninger, J Lin, T Sauter, M Heinäniemi Nucleic acids research 42 (3), 1474-1496, 2014 | 68 | 2014 |
| Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring FMS Martins, M Galhardo, AF Filipe, A Teixeira, P Pinheiro, J Paupério, ... Molecular Ecology Resources 19 (4), 863-876, 2019 | 56 | 2019 |
| Deliverable 4.2 (D4. 2): Protocol for building and organising reference collections of DNA sequences, EnvMetaGen project (Grant Agreement No 668981) S Ferreira, N Fonseca, B Egeter, J Paupério, M Galhardo, F Oxelfelt, ... Zenodo https://doi. org/10.5281/zenodo 3515967, 2018 | 18 | 2018 |
| Cell type-selective disease-association of genes under high regulatory load M Galhardo, P Berninger, TP Nguyen, T Sauter, L Sinkkonen Nucleic acids research 43 (18), 8839-8855, 2015 | 14 | 2015 |
| In Vivo Reporter Assays Uncover Changes in Enhancer Activity Caused by Type 2 Diabetes–Associated Single Nucleotide Polymorphisms A Eufrásio, C Perrod, FJ Ferreira, M Duque, M Galhardo, J Bessa Diabetes 69 (12), 2794-2805, 2020 | 10 | 2020 |
| Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers R Bordeira-Carriço, J Teixeira, M Duque, M Galhardo, D Ribeiro, ... Nature Communications 13 (1), 1945, 2022 | 9 | 2022 |
| Deliverable 4.4 (D4. 4): Protocol for next-gen analysis of eDNA samples, EnMetaGen project (Grant Agreement No 668981) J Paupério, N Fonseca, B Egeter, M Galhardo, S Ferreira, F Oxelfelt, ... | 7 | 2018 |
| IDARE2—Simultaneous visualisation of multiomics data in cytoscape T Pfau, M Galhardo, J Lin, T Sauter Metabolites 11 (5), 300, 2021 | 6 | 2021 |
| A conserved notochord enhancer controls pancreas development in vertebrates JP Amorim, A Gali-Macedo, H Marcelino, R Bordeira-Carrico, S Naranjo, ... Cell Reports 32 (1), 2020 | 6 | 2020 |
| Transcriptomics profiling of human SGBS adipogenesis M Galhardo, L Sinkkonen, P Berninger, J Lin, T Sauter, M Heinäniemi Genomics data 2, 246-248, 2014 | 5 | 2014 |
| ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes M Galhardo, L Sinkkonen, P Berninger, J Lin, T Sauter, M Heinäniemi Genomics data 2, 230-236, 2014 | 5 | 2014 |
| Age-associated clonal B cells drive B cell lymphoma in mice JP Castro, AV Shindyapina, A Barbieri, K Ying, OS Strelkova, JA Paulo, ... Nature Aging 4 (10), 1403-1417, 2024 | 2 | 2024 |
| FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1 FJ Ferreira, M Galhardo, J Teixeira, E Logarinho, J Bessa bioRxiv, 2023.05. 04.539315, 2023 | 2 | 2023 |
| Cis-regulatory similarities in the zebrafish and human pancreas uncover potential disease-related enhancers R Bordeira-Carriço, J Teixeira, M Duque, M Galhardo, D Ribeiro, ... bioRxiv, 2020.04. 27.064220, 2020 | 2 | 2020 |
| Deliverable 4.5 (D4. 5): Protocol for the processing of DNA sequence data generated by next-gen platforms, EnMetaGen project (Grant Agreement No 668981) M Galhardo, N Foneca, B Egeter, J Paupério, S Ferreira, F Oxelfelt, ... | 2 | 2018 |
| Deliverable 4.3 (D4. 3): Protocol for field collection and preservation of eDNA samples, EnvMetaGen project (Grant Agreement No 668981) B Egeter, N Fonseca, J Paupério, M Galhardo, S Ferreira, F Oxelfelt, ... | 1 | 2018 |
| Improving freshwater biodiversity assessment: application of molecular tools on preservative ethanol from macroinvertebrate bulks F Martins, M Galhardo, A Teixeira, P Pinheiro, AF Filipe, PC Alves, P Beja | 1 | 2018 |
| Chemical enhancement of DNA repair in aging JC Macedo, MM da Silva, JM Magalhães, C Sousa-Soares, MI Ala, ... bioRxiv, 2025 | | 2025 |
| Chemical enhancement of DNA repair in aging E Logarinho, J Macedo, MM Silva, JM Magalhaes, C Sousa-Soares, ... bioRxiv, 2025.02. 21.639496, 2025 | | 2025 |
| Genetic variants associated to type 2 diabetes modulate endocrine enhancers in vivo A Eufrasio, C Perrod, FJ Ferreira, M Duque, M Galhardo, J Bessa EUROPEAN JOURNAL OF HUMAN GENETICS 32, 781-781, 2024 | | 2024 |
