| Alterations of the human gut microbiome in multiple sclerosis S Jangi, R Gandhi, LM Cox, N Li, F Von Glehn, R Yan, B Patel, ... Nature communications 7 (1), 12015, 2016 | 1242 | 2016 |
| Long-term forest soil warming alters microbial communities in temperate forest soils KM DeAngelis, G Pold, BD Topçuoğlu, LTA van Diepen, RM Varney, ... Frontiers in microbiology 6, 104, 2015 | 345 | 2015 |
| A framework for effective application of machine learning to microbiome-based classification problems BD Topçuoğlu, NA Lesniak, MT Ruffin IV, J Wiens, PD Schloss MBio 11 (3), 10.1128/mbio. 00434-20, 2020 | 150 | 2020 |
| Experimental investigation on the controls of clumped isotopologue and hydrogen isotope ratios in microbial methane DS Gruen, DT Wang, M Könneke, BD Topçuoğlu, LC Stewart, ... Geochimica et Cosmochimica Acta 237, 339-356, 2018 | 55 | 2018 |
| Hydrogen limitation and syntrophic growth among natural assemblages of thermophilic methanogens at deep-sea hydrothermal vents BD Topçuoğlu, LC Stewart, HG Morrison, DA Butterfield, JA Huber, ... Frontiers in Microbiology 7, 1240, 2016 | 46 | 2016 |
| Long-term forest soil warming alters microbial communities in temperate forest soils. Front Microbiol 6: 104 KM DeAngelis, G Pold, BD Topçuoglu, LT van Diepen, RM Varney, ... | 41 | 2015 |
| mikropml: user-friendly R package for supervised machine learning pipelines BD Topçuoğlu, Z Lapp, KL Sovacool, E Snitkin, J Wiens, PD Schloss Journal of open source software 6 (61), 2021 | 38 | 2021 |
| Women are underrepresented and receive differential outcomes at ASM journals: a six-year retrospective analysis AK Hagan, BD Topçuoğlu, ME Gregory, HA Barton, PD Schloss MBio 11 (6), 10.1128/mbio. 01680-20, 2020 | 37 | 2020 |
| Fecal short-chain fatty acids are not predictive of colonic tumor status and cannot be predicted based on bacterial community structure MA Sze, BD Topçuoğlu, NA Lesniak, MT Ruffin IV, PD Schloss MBio 10 (4), 10.1128/mbio. 01454-19, 2019 | 34 | 2019 |
| Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth … BD Topçuoğlu, C Meydan, TB Nguyen, SQ Lang, JF Holden Applied and Environmental Microbiology 85 (9), e00180-19, 2019 | 28 | 2019 |
| A framework for effective application of machine learning to microbiome-based classification problems. mBio 11: e00434-20 BD Topçuoglu, NA Lesniak, MT Ruffin, J Wiens, PD Schloss, MJ Blaser | 20 | 2020 |
| Alterations of the human gut microbiome in multiple sclerosis. Nat Commun. 2016; 7: 12015 S Jangi, R Gandhi, LM Cox, N Li, F Von Glehn, R Yan, B Patel, ... Epub 2016/06/29. https://doi. org/10.1038/ncomms12015 PMID: 27352007, 0 | 19 | |
| A goldilocks principle for the gut microbiome: taxonomic resolution matters for microbiome-based classification of colorectal cancer CR Armour, BD Topçuoğlu, A Garretto, PD Schloss MBio 13 (1), e03161-21, 2022 | 13 | 2022 |
| Seafloor incubation experiment with deep-sea hydrothermal vent fluid reveals effect of pressure and lag time on autotrophic microbial communities CS Fortunato, DA Butterfield, B Larson, N Lawrence-Slavas, CK Algar, ... Applied and Environmental Microbiology 87 (9), e00078-21, 2021 | 13 | 2021 |
| Formate hydrogenlyase and formate secretion ameliorate H2 inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae BD Topçuoğlu, C Meydan, R Orellana, JF Holden Environmental microbiology 20 (3), 949-957, 2018 | 13 | 2018 |
| Vaccine hyporesponse induced by individual antibiotic treatment in mice and non-human primates is diminished upon recovery of the gut microbiome G Swaminathan, M Citron, J Xiao, JE Norton Jr, AL Reens, BD Topçuoğlu, ... Vaccines 9 (11), 1340, 2021 | 10 | 2021 |
| mikropml: user-friendly R package for supervised machine learning pipelines. J Open Source Softw 6: 3073 B Topçuoglu, Z Lapp, K Sovacool, E Snitkin, J Wiens, P Schloss | 10 | 2021 |
| Ten simple rules to increase computational skills among biologists with Code Clubs AK Hagan, NA Lesniak, MJ Balunas, L Bishop, WL Close, MD Doherty, ... PLoS computational biology 16 (8), e1008119, 2020 | 9 | 2020 |
| Extremophiles: hot environments BD Topçuoglu, JF Holden Academic Press, 2019 | 9 | 2019 |
| Lower hydrogen flux leads to larger carbon isotopic fractionation of methane and biomarkers during hydrogenotrophic methanogenesis TB Nguyen, BD Topçuoğlu, JF Holden, DE LaRowe, SQ Lang Geochimica et Cosmochimica Acta 271, 212-226, 2020 | 7 | 2020 |
Patrick D. SchlossFrederick G Novy Collegiate Professor of Microbiology & Immunology, University of MichiganVerified email at umich.edu
