| Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage M Chakraborty, JG Baldwin-Brown, AD Long, JJ Emerson Nucleic acids research 44 (19), e147-e147, 2016 | 459 | 2016 |
| Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits M Chakraborty, JJ Emerson, SJ Macdonald, AD Long Nature communications 10 (1), 4872, 2019 | 157 | 2019 |
| Hidden genetic variation shapes the structure of functional elements in Drosophila M Chakraborty, NW VanKuren, R Zhao, X Zhang, S Kalsow, JJ Emerson Nature genetics 50 (1), 20-25, 2018 | 154 | 2018 |
| Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing EA Solares*, M Chakraborty*, DE Miller, S Kalsow, K Hall, AG Perera, ... G3: Genes, Genomes, Genetics 8 (10), 3143-3154, 2018 | 99 | 2018 |
| Evolution of genome structure in the Drosophila simulans species complex M Chakraborty*, CH Chang*, DE Khost, J Vedanayagam, JR Adrion, ... Genome research 31 (3), 380-396, 2021 | 89 | 2021 |
| Topologically associating domains and their role in the evolution of genome structure and function in Drosophila Y Liao, X Zhang, M Chakraborty, JJ Emerson Genome research 31 (3), 397-410, 2021 | 64 | 2021 |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly M Chakraborty*, A Ramaiah*, A Adolfi, P Halas, B Kaduskar, LT Ngo, ... BMC biology 19 (1), 1-16, 2021 | 51* | 2021 |
| Behavioral and Genomic Sensory Adaptations Underlying the Pest Activity of Drosophila suzukii SM Durkin, M Chakraborty, A Abrieux, KM Lewald, A Gadau, N Svetec, ... Molecular biology and evolution 38 (6), 2532-2546, 2021 | 40 | 2021 |
| Evidence that environmental heterogeneity maintains a detoxifying enzyme polymorphism in Drosophila melanogaster M Chakraborty, JD Fry Current Biology 26 (2), 219-223, 2016 | 32 | 2016 |
| Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish J Heras, M Chakraborty, JJ Emerson, DP German Proceedings of the Royal Society B 287 (1921), 20192327, 2020 | 28 | 2020 |
| Deep phylogenomics of a tandem-repeat galectin regulating appendicular skeletal pattern formation R Bhat, M Chakraborty, T Glimm, TA Stewart, SA Newman BMC Evolutionary Biology 16, 1-11, 2016 | 20 | 2016 |
| Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection RA Linder, A Majumder, M Chakraborty, A Long Genetics 215 (2), 323-342, 2020 | 18 | 2020 |
| The genome trilogy of Anopheles stephensi, an urban malaria vector, reveals structure of a locus associated with adaptation to environmental heterogeneity A Thakare, C Ghosh, T Alalamath, N Kumar, H Narang, S Whadgar, ... Scientific Reports 12 (1), 3610, 2022 | 13 | 2022 |
| Drosophila lacking a homologue of mammalian ALDH2 have multiple fitness defects M Chakraborty, JD Fry Chemico-biological interactions 191 (1-3), 296-302, 2011 | 13 | 2011 |
| Structural divergence in vertebrate phylogeny of a duplicated prototype galectin R Bhat, M Chakraborty, IS Mian, SA Newman Genome Biology and Evolution 6 (10), 2721-2730, 2014 | 12 | 2014 |
| Parallel Functional Changes in Independent Testis-Specific Duplicates of Aldehyde dehydrogenase in Drosophila M Chakraborty, JD Fry Molecular Biology and Evolution 32 (4), 1029-1038, 2015 | 11 | 2015 |
| Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision in Heliconius butterflies M Chakraborty, AG Lara, A Dang, KJ McCulloch, D Rainbow, D Carter, ... Proceedings of the National Academy of Sciences 120 (33), e2301411120, 2023 | 10 | 2023 |
| Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome HG Shukla, M Chakraborty, JJ Emerson bioRxiv, 2024 | 5 | 2024 |
| Genome structural variants shape adaptive success of an invasive urban malaria vector Anopheles stephensi A Samano, N Kumar, Y Liao, F Ishtiaq, M Chakraborty bioRxiv, 2024.07. 29.605641, 2024 | 2 | 2024 |
| Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline M Hu, P Wan, C Chen, S Tang, J Chen, L Wang, M Chakraborty, Y Zhou, ... bioRxiv, 2025.02. 07.637096, 2025 | | 2025 |
J.J. EmersonUniversity of California IrvineVerified email at uci.edu
