Pim Bongaerts

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Ove Hoegh-GuldbergUniversity of QueenslandVerified email at uq.edu.au
Paul MuirResearcher & Collection Manager Qld Museum, Affiliate University of QldVerified email at qm.qld.gov.au
Kyra B. HayThe University of QueenslandVerified email at uq.edu.au
Pedro R FradeNatural History Museum ViennaVerified email at ualg.pt
Madeleine JH van OppenProfessor FAA, The University of Melbourne & Australian Institute of Marine ScienceVerified email at aims.gov.au
Eugenia SampayoAustralian Biological Resources Fellow, The University of QueenslandVerified email at uq.edu.au
Alejandra Hernández-AgredaPostdoctoral Research Fellow - California Academy of SciencesVerified email at calacademy.org
Cynthia RiginosAustralian Institute of Marine Science; The University of QueenslandVerified email at aims.gov.au
Tracy D AinsworthAssociate Professor, Scientia Fellow, The University of New South Wales, AustraliaVerified email at unsw.edu.au
Bill LeggatProfessor, School of Environmental and Life SciencesVerified email at newcastle.edu.au
Ira CookeJames Cook UniversityVerified email at jcu.edu.au
Rolf PM BakNIOZ CarmabiVerified email at nioz.nl
Gal EyalBar Ilan UniversityVerified email at uq.edu.au
Mark JA VermeijCarmabi Foundation/ Department of Freshwater and Marine Ecology, University of AmsterdamVerified email at carmabi.org
Manuel Gonzalez-RiveroAustralian Institute of Marine ScienceVerified email at aims.gov.au
Linda TonkPostdoctoral fellow at School of Biological Sciences, The University of QueenslandVerified email at uq.edu.au
Luiz A. RochaCurator and Follett Chair of Ichthyology, California Academy of SciencesVerified email at calacademy.org
Hudson PinheiroCenter for Marine Biology, University of São PauloVerified email at usp.br
Olga PantosInstitute of Environmental Science and Research Ltd.Verified email at esr.cri.nz

Pim Bongaerts

McCosker Chair of Aquatic Biology, California Academy of Sciences

Verified email at calacademy.org - Homepage

coral reefs mesophotic coral ecosystems evolutionary biology molecular ecology population genomics


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Assessing the ‘deep reef refugia’hypothesis: focus on Caribbean reefs P Bongaerts, T Ridgway, EM Sampayo, O Hoegh-Guldberg Coral reefs 29, 309-327, 2010	664	2010
The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts T D Ainsworth, L Krause, T Bridge, G Torda, JB Raina, M Zakrzewski, ... The ISME journal 9 (10), 2261-2274, 2015	563	2015
Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type EM Sampayo, T Ridgway, P Bongaerts, O Hoegh-Guldberg Proceedings of the National Academy of Sciences 105 (30), 10444-10449, 2008	522	2008
Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs LA Rocha, HT Pinheiro, B Shepherd, YP Papastamatiou, OJ Luiz, RL Pyle, ... Science 361 (6399), 281-284, 2018	279	2018
Deep reefs are not universal refuges: reseeding potential varies among coral species P Bongaerts, C Riginos, R Brunner, N Englebert, SR Smith, ... Science Advances 3 (2), e1602373, 2017	243	2017
Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated Symbiodinium P Bongaerts, C Riginos, T Ridgway, EM Sampayo, MJH van Oppen, ... PLoS one 5 (5), e10871, 2010	210	2010
The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia MJH Van Oppen, P Bongaerts, JN Underwood, LM Peplow, TF Cooper Molecular ecology 20 (8), 1647-1660, 2011	205	2011
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis H Liu, TG Stephens, RA González-Pech, VH Beltran, B Lapeyre, ... Communications biology 1 (1), 95, 2018	200	2018
Call to protect all coral reefs TCL Bridge, TP Hughes, JM Guinotte, P Bongaerts Nature Climate Change 3 (6), 528-530, 2013	200	2013
The microbial signature provides insight into the mechanistic basis of coral success across reef habitats A Hernandez-Agreda, W Leggat, P Bongaerts, TD Ainsworth MBio 7 (4), 10.1128/mbio. 00560-16, 2016	156	2016
Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix O Pantos, P Bongaerts, PG Dennis, GW Tyson, O Hoegh-Guldberg The ISME journal 9 (9), 1916-1927, 2015	156	2015
Deep reefs of the Great Barrier Reef offer limited thermal refuge during mass coral bleaching PR Frade, P Bongaerts, N Englebert, A Rogers, M Gonzalez-Rivero, ... Nature Communications 9 (1), 3447, 2018	145	2018
Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies C Riginos, ED Crandall, L Liggins, P Bongaerts, EA Treml Current zoology 62 (6), 581-601, 2016	134	2016
Rethinking the coral microbiome: simplicity exists within a diverse microbial biosphere A Hernandez-Agreda, W Leggat, P Bongaerts, C Herrera, TD Ainsworth MBio 9 (5), 10.1128/mbio. 00812-18, 2018	131	2018
Sharing the slope: depth partitioning of agariciid corals and associated Symbiodiniumacross shallow and mesophotic habitats (2-60 m) on a Caribbean reef P Bongaerts, PR Frade, JJ Ogier, KB Hay, J Van Bleijswijk, N Englebert, ... BMC Evolutionary Biology 13, 1-15, 2013	127	2013
Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community P Bongaerts, PR Frade, KB Hay, N Englebert, KRW Latijnhouwers, ... Scientific reports 5 (1), 7652, 2015	122	2015
Diversity of Scleractinia and Octocorallia in the mesophotic zone of the Great Barrier Reef, Australia TCL Bridge, KE Fabricius, P Bongaerts, CC Wallace, PR Muir, TJ Done, ... Coral Reefs 31, 179-189, 2012	118	2012
Beyond the “Deep Reef Refuge” hypothesis: a conceptual framework to characterize persistence at depth P Bongaerts, TB Smith Mesophotic coral ecosystems, 881-895, 2019	117	2019
Prevalent endosymbiont zonation shapes the depth distributions of scleractinian coral species P Bongaerts, M Carmichael, KB Hay, L Tonk, PR Frade, ... Royal Society open science 2 (2), 140297, 2015	112	2015
Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats P Bongaerts, C Riginos, KB Hay, MJH van Oppen, O Hoegh-Guldberg, ... BMC evolutionary biology 11, 1-15, 2011	112	2011

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