Follow
Jacob D Washburn
Jacob D Washburn
USDA-ARS
Verified email at usda.gov
Title
Cited by
Cited by
Year
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower
PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ...
The Plant Cell 29 (9), 2150-2167, 2017
2412017
Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence
JD Washburn, MK Mejia-Guerra, G Ramstein, KA Kremling, R Valluru, ...
Proceedings of the National Academy of Sciences 116 (12), 5542-5549, 2019
1622019
Phylogeny and photosynthesis of the grass tribe Paniceae
JD Washburn, JC Schnable, G Davidse, JC Pires
American journal of botany 102 (9), 1493-1505, 2015
642015
Polyploids as a “model system” for the study of heterosis
JD Washburn, JA Birchler
Plant reproduction 27, 1-5, 2014
522014
Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models
JD Washburn, MB Burch, JAV Franco
Crop Science 60 (2), 622-638, 2020
482020
Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales
D Mayfield-Jones, JD Washburn, T Arias, PP Edger, JC Pires, GC Conant
Seminars in cell & developmental biology 24 (4), 320-331, 2013
482013
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales
ME Mabry, JM Brose, PD Blischak, B Sutherland, WT Dismukes, ...
American journal of botany 107 (8), 1148-1164, 2020
462020
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses
JD Washburn, JC Schnable, GC Conant, TP Brutnell, Y Shao, Y Zhang, ...
Scientific Reports 7 (13528), 2017
402017
Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology
Jacob D. Washburn, Kevin A. Bird, Gavin C. Conant, J. Chris Pires
International Journal of Plant Sciences, 2016
402016
Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor× S. propinquum population
JD Washburn, SC Murray, BL Burson, RR Klein, RW Jessup
Molecular Breeding 31, 153-162, 2013
402013
Predicting phenotypes from genetic, environment, management, and historical data using CNNs
JD Washburn, E Cimen, G Ramstein, T Reeves, P O’Briant, G McLean, ...
Theoretical and Applied Genetics 134 (12), 3997-4011, 2021
292021
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Y Hao, ME Mabry, PP Edger, M Freeling, C Zheng, L Jin, R VanBuren, ...
Genome research 31 (5), 799-810, 2021
292021
Yield prediction through integration of genetic, environment, and management data through deep learning
DR Kick, JG Wallace, JC Schnable, JM Kolkman, B Alaca, TM Beissinger, ...
G3: Genes, Genomes, Genetics 13 (4), jkad006, 2023
242023
Estimation of Rhizome Composition and Overwintering Ability in Perennial Sorghum spp. Using Near-Infrared Spectroscopy (NIRS)
JD Washburn, DK Whitmire, SC Murray, BL Burson, TA Wickersham, ...
Bioenergy Research 6, 822-829, 2013
152013
Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America
M Lopez-Cruz, FM Aguate, JD Washburn, N de Leon, SM Kaeppler, ...
Nature Communications 14 (1), 6904, 2023
132023
Registration of Perennial Sorghum bicolor × S. propinquum Line PSH12TX09
RW Jessup, RR Klein, BL Burson, SC Murray, JD Washburn, JJ Heitholt, ...
Journal of Plant Registrations 11 (1), 76-79, 2017
122017
Genomes to fields 2022 maize genotype by environment prediction competition
DC Lima, JD Washburn, JI Varela, Q Chen, JL Gage, MC Romay, ...
BMC Research Notes 16 (1), 148, 2023
112023
Progressive heterosis in genetically defined tetraploid maize
JD Washburn, MJ McElfresh, JA Birchler
Journal of genetics and genomics 46 (8), 389-396, 2019
112019
Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived
Y Hao, JD Washburn, J Rosenthal, B Nielsen, E Lyons, PP Edger, ...
Genome Biology and Evolution 10 (3), 999-1011, 2018
112018
2018–2019 field seasons of the Maize Genomes to Fields (G2F) G x E project
DC Lima, AC Aviles, RT Alpers, BA McFarland, S Kaeppler, D Ertl, ...
BMC Genomic Data 24 (1), 29, 2023
82023
The system can't perform the operation now. Try again later.
Articles 1–20